Chris Seidel

Scientist

Email: <seidel AT SPAMFREE pangloss DOT com>
Homepage: http://www.pangloss.com/seidel/

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Bibliography

• Lee JS, Garrett AS, Yen K, Takahashi YH, Hu D, Jackson J, Seidel C, Pugh BF, Shilatifard A. (2012). Codependency of H2B monoubiquitination and nucleosome reassembly on Chd1. Genes Dev. 26(9):914-9.
• Herz HM, Mohan M, Garrett AS, Miller C, Casto D, Zhang Y, Seidel C, Haug JS, Florens L, Washburn MP, Yamaguchi M, Shiekhattar R, Shilatifard A. (2012). Polycomb repressive complex 2-dependent and -independent functions of Jarid2 in transcriptional regulation in Drosophila. Mol Cell Biol. 32(9):1683-93.
• Chen G, Bradford WD, Seidel CW, Li R. (2012). Hsp90 stress potentiates rapid cellular adaptation through induction of aneuploidy. Nature. 482(7384):246-50.
• Gilmore JM, Sardiu ME, Venkatesh S, Stutzman B, Peak A, Seidel CW, Workman JL, Florens L, Washburn MP. (2012). Characterization of a highly conserved histone related protein, Ydl156w, and its functional associations using quantitative proteomic analyses. Mol Cell Proteomics. 11(4):M111.011544.
• Smith ER, Lin C, Garrett AS, Thornton J, Mohaghegh N, Hu D, Jackson J, Saraf A, Swanson SK, Seidel C, Florens L, Washburn MP, Eissenberg JC, Shilatifard A. (2011). The little elongation complex regulates small nuclear RNA transcription. Mol Cell. 44(6):954-65.
• Weake VM, Dyer JO, Seidel C, Box A, Swanson SK, Peak A, Florens L, Washburn MP, Abmayr SM, Workman JL. (2011). Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation. Genes Dev. 25(14):1499-509.
• Lin C, Garrett AS, De Kumar B, Smith ER, Gogol M, Seidel C, Krumlauf R, Shilatifard A. (2011). Dynamic transcriptional events in embryonic stem cells mediated by the super elongation complex (SEC). Genes Dev. 25(14):1486-98.
• Takahashi H, Parmely TJ, Sato S, Tomomori-Sato C, Banks CA, Kong SE, Szutorisz H, Swanson SK, Martin-Brown S, Washburn MP, Florens L, Seidel CW, Lin C, Smith ER, Shilatifard A, Conaway RC, Conaway JW. (2011). Human mediator subunit MED26 functions as a docking site for transcription elongation factors. Cell. 146(1):92-104.

• Takahashi YH, Schulze JM, Jackson J, Hentrich T, Seidel C, Jaspersen SL, Kobor MS, Shilatifard A. (2011). Dot1 and histone H3K79 methylation in natural telomeric and HM silencing. Mol Cell. 42(1):118-26.

• Vo NV, Sowa GA, Kang JD, Seidel C, Studer RK. (2010). Prostaglandin E2 and prostaglandin F2α differentially modulate matrix metabolism of human nucleus pulposus cells. J Orthop Res. 28(10):1259-66.
• Mastushita-Sakai T, White-Grindley E, Samuelson J, Seidel C, Si K. (2010). Drosophila Orb2 targets genes involved in neuronal growth, synapse formation, and protein turnover. Proc Natl Acad Sci U S A. 107(26):11987-92.
• Xia S, Li X, Johnson T, Seidel C, Wallace DP, Li R. (2010). Polycystin-dependent fluid flow sensing targets histone deacetylase 5 to prevent the development of renal cysts. Development. 137(7):1075-84.
• Nugent RL, Johnsson A, Fleharty B, Gogol M, Xue-Franzén Y, Seidel C, Wright AP, Forsburg SL. (2010). Expression profiling of S. pombe acetyltransferase mutants identifies redundant pathways of gene regulation. BMC Genomics. 11:59.
• Jansen JM, Wanless AG, Seidel CW, Weiss EL. (2009). Cbk1 regulation of the RNA-binding protein Ssd1 integrates cell fate with translational control. Curr Biol. 19(24):2114-20.
• Fournier ML, Paulson A, Pavelka N, Mosley AL, Gaudenz K, Bradford WD, Glynn E, Li H, Sardiu ME, Fleharty B, Seidel C, Florens L, Washburn MP. (2010). Delayed correlation of mRNA and protein expression in rapamycin-treated cells and a role for Ggc1 in cellular sensitivity to rapamycin. Mol Cell Proteomics. 9(2):271-84.

• Gard S, Light W, Xiong B, Bose T, McNairn AJ, Harris B, Fleharty B, Seidel C, Brickner JH, Gerton JL. (2009). Cohesinopathy mutations disrupt the subnuclear organization of chromatin. J Cell Biol. 187(4):455-62.

• Wang P, Lin C, Smith ER, Guo H, Sanderson BW, Wu M, Gogol M, Alexander T, Seidel C, Wiedemann LM, Ge K, Krumlauf R, Shilatifard A. (2009). Global analysis of H3K4 methylation defines MLL family member targets and points to a role for MLL1-mediated H3K4 methylation in the regulation of transcriptional initiation by RNA polymerase II.

Mol Cell Biol. 29(22):6074-85.

• Li B, Jackson J, Simon MD, Fleharty B, Gogol M, Seidel C, Workman JL, Shilatifard A. (2009). Histone H3 Lysine 36 Dimethylation (H3K36me2) Is Sufficient to Recruit the Rpd3s Histone Deacetylase Complex and to Repress Spurious Transcription. J Biol Chem. 284(12):7970-6.

• Rancati G, Pavelka N, Fleharty B, Noll A, Trimble R, Walton K, Perera A, Staehling-Hampton K, Seidel CW, Li R. (2008). Aneuploidy underlies rapid adaptive evolution of yeast cells deprived of a conserved cytokinesis motor. Cell 135(5):879-93.
• Moldón A, Malapeira J, Gabrielli N, Gogol M, Gómez-Escoda B, Ivanova T, Seidel C, Ayté J. (2008). Promoter-driven splicing regulation in fission yeast. Nature 455(7215):997-1000.
• Sansó M, Gogol M, Ayté J, Seidel C, Hidalgo E. (2008). Transcription factors Pcr1 and Atf1 have distinct roles in stress- and Sty1-dependent gene regulation. Eukaryot Cell. 7(5):826-35.
• Haug JS, He XC, Grindley JC, Wunderlich JP, Gaudenz K, Ross JT, Paulson A, Wagner KP, Xie Y, Zhu R, Yin T, Perry JM, Hembree MJ, Redenbaugh EP, Radice GL, Seidel C, Li L. (2008) N-cadherin expression level distinguishes reserved versus primed states of hematopoietic stem cells. Cell Stem Cell. 2(4):367-79.

• Seidel, Chris. Introduction to Microarrays. Invited chapter in: Analysis of Microarray Data: A Network Based Approach. Editors: F. Emmert-Streib & M. Dehmer. Wiley (2008).

• Sanso M., Gogol M., Ayte J., Seidel C. and Hidalgo E. (2008). The transcription factors Pcr1 and Atf1 have distinct roles in stress- and Sty1-dependent gene regulation. Eukaryot Cell. 2008 Mar 28 (Epub ahead of print)
• Weake VM, Lee KK, Guelman S, Lin CH, Seidel C, Abmayr SM, Workman JL. (2008). SAGA-mediated H2B deubiquitination controls the development of neuronal connectivity in the Drosophila visual system. EMBO J. 27(2):394-405.
• Bausch C, Noone S, Henry JM, Gaudenz K, Sanderson B, Seidel C, Gerton JL. (2007). Transcription alters chromosomal locations of cohesin in Saccharomyces cerevisiae. Mol Cell Biol. 27(24):8522-32.
• Li B, Gogol M, Carey M, Lee D, Seidel C, Workman JL. (2007). Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin. Science 316:1050-4.
• Li B, Gogol M, Carey M, Pattenden SG, Seidel C, Workman JL. (2007). Infrequently transcribed long genes depend on the Set2/Rpd3S pathway for accurate transcription. Genes Dev. 2007 21(11):1422-30.
• Nazila Salamat-Miller, Jianwen Fang, Christopher W. Seidel, Yassen Assenov, Mario Albrecht, and C. Russell Middaugh (2007). A Network-based Analysis of Polyanion-binding Proteins Utilizing Human Protein Arrays. Journal of Biological Chemistry (282) 10153-63
• Collins KA, Camahort R, Seidel C, Gerton JL, Biggins S. (2007) The overexpression of a S. cerevisiae centromeric histone H3 variant mutant protein leads to a defect in kinetochore biorientation. Genetics 175:513-25
• Salamat-Miller, N., Fang, J., Seidel, C.W., Smalter, A., and Middaugh, C.R. (2006). A network-based analysis of polyanion binding proteins utilizing yeast protein arrays. Mol Cell Proteomics 5(12):2263-78.
• Li, B., Pattenden, S.G., Lee, D., Gutierrez, J., Chen, J., Seidel, C., Gerton, J., and Workman, J.L. (2005). Preferential occupancy of histone variant H2AZ at inactive promoters influences local histone modifications and chromatin remodeling. Proc. Natl. Acad. Sci. USA. 102(51):18385-90.
• Sinibaldi R, O'Connell C, Seidel C, Rodriguez H. (2001). Gene expression analysis on medium-density oligonucleotide arrays. Methods Mol. Biol. 170:211-22.

• Chris Seidel & Ralph Sinibaldi. (2002). Genechips for Age-Related Gene Expression and Analysis. Invited Chapter in: Oxidative Stress and Aging: Advances in Basic Science, Diagnostics, and Intervention. Editors: Richard G. Cutler & Henry Rodriguez. World Scientific.

• Bidlingmaier, S., Weiss, E., Seidel, C., Drubin, D., and Snyder, M. (2002). The Cbk1p Pathway is Important for Polarized Cell Growth and Cell Separation in Saccharomyces cerevisiae. Mol. Cell. Biol. 21, 2449-2462.
• Seidel CW; Peck LJ. (1994) Purification of a calcium dependent ribonuclease from Xenopus laevis. Nucleic Acids Research 22(8):1456-62.
• Seidel CW; Peck LJ. (1992) Kinetic control of 5 S RNA gene transcription. Journal of Molecular Biology 227(4):1009-18.

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