The following 63 words could not be found in the dictionary of 615 words (including 615 LocalSpellingWords) and are highlighted below:

and   be   by   can   choose   class   classes   client   comment   don   Downloads   each   entries   Example   file   followed   from   Gene   If   Install   install   Java   know   Libraries   line   listed   local   match   must   names   need   Notes   number   of   package   Pattern   pound   Programming   Random   represent   samples   second   sign   starts   The   the   then   there   This   this   to   two   unique   use   Using   version   web   why   with   within   You   you   zip  

Clear message

Example CLS file: 

35 2 1
# ALL AML
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1

The first line has the number_of_samples followed by the number_of_classes, and the number 1 (I don't know why). The second line starts with a pound sign followed by the names of the classes. This is not a comment line! The names of the classes must be unique and represent each class of samples, and the number of names listed must match the number of classes. If there are two classes, you need two entries.

Random Notes

Using GenePattern from within R

GenePattern (last edited 2008-04-08 16:17:57 by ChrisSeidel)