Example CLS file:

35 2 1
# ALL AML
0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1

Random Notes

Using GenePattern from within R

• Install rJava package (from CRAN)

• Install GenePattern - from the GenePattern web client, choose Downloads -> Programming Libraries, and then the GenePattern_version.zip